Internal

These are modules that are used by BPReveal but that you probably don’t need to mess with. Nevertheless, you can always import them yourself:

from bpreveal.internal import disableTensorflowLogging

• internal.disableTensorflowLogging
  • LeaveStderrAlone
  • SuppressStderr
• internal.constants
  • ONEHOT_T
  • ONEHOT_AR_T
  • PRED_T
  • PRED_AR_T
  • LOGIT_T
  • LOGIT_AR_T
  • LOGCOUNT_T
  • IMPORTANCE_T
  • IMPORTANCE_AR_T
  • MODEL_ONEHOT_T
  • MOTIF_FLOAT_T
  • MOTIF_FLOAT_AR_T
  • COLOR_SPEC_T
  • DNA_COLOR_SPEC_T
  • RGB_T
  • ANNOTATION_T
  • NUM_BASES
  • H5_CHUNK_SIZE
  • QUEUE_TIMEOUT
  • GLOBAL_TENSORFLOW_LOADED
  • GENOME_NUCLEOTIDE_FREQUENCY
  • setTensorflowLoaded()
  • getTensorflowLoaded()
  • setDefaultFontFamily()
• internal.crashQueue
  • CrashQueue
• internal.files
  • addH5Metadata()
• internal.interpreter
  • Closure
  • evalAstRaw()
  • evalAst()
  • evalString()
  • evalFile()
• internal.interpretUtils
  • Query
  • Result
  • Generator
  • Saver
  • InterpRunner
  • FlatListSaver
  • FlatH5Saver
  • PisaH5Saver
  • ListGenerator
  • FastaGenerator
  • FlatBedGenerator
  • PisaBedGenerator
  • combineMultAndDiffref()
  • isShappable()
• internal.predictUtils
  • FastaReader
  • BedReader
  • H5Writer
  • addGenomeInfo()
  • addCoordsInfo()
• internal.plotUtils
  • plotLogo()
  • getCoordinateTicks()
  • replaceThousands()
  • massageTickLabels()
  • buildConfig()
  • loadFromBigwig()
  • normalizeProfileSection()
  • normalizeProfileColor()
  • loadSequence()
  • loadPisaAnnotations()
  • addResizeCallbacks()
  • addAnnotations()
  • addPisaPlot()
  • addPisaGraph()
  • addCbar()
  • addLegend()
  • getPisaAxes()
  • getPisaGraphAxes()
  • addVerticalProfilePlot()
  • addHorizontalProfilePlot()