tools.shiftBigwigs
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Slide bigwigs to turn mnase endpoint data into midpoints.
usage: shiftBigwigs [-h] [--bw5 BW5] [--bw3 BW3] [--scan]
[--mnase] [--out OUT]
Named Arguments
- --bw5
The first (5’) bigwig file.
- --bw3
The second (3’) bigwig file.
- --scan
Measure the cross-correlation between the bigwigs and display a plot.
Default: False
- --mnase
Perform the +79, -80 shift that is recommended for mnase
Default: False
- --out
The name of the bigwig file to write, or, if scanning, the name of the dat file containing the correlation.