tools.revcompTools

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A utility for generating reverse-complement test data.

usage: revcompTools [-h] [--bed BED]
                    [--input-length INPUTLENGTH]
                    [--input-bigwig INPUTBIGWIGFNAME]
                    [--output-bigwig OUTPUTBIGWIGFNAME]
                    [--revcomp] [--genome GENOME]
                    [--output-fasta OUTPUTFASTAFNAME]
                    [--output-bed OUTPUTBEDFNAME]

Named Arguments

--bed

The bed file containing regions to revcomp.

--input-length

The input length of your model.

--input-bigwig

The input bigwig for reverse complement

--output-bigwig

The output bigwig for reverse complement.

--revcomp

Should the sequences be reverse-complemented?

Default: False

--genome

The genome fasta file.

--output-fasta

The name of the fasta-format file that shouldbe written.

--output-bed

For regions that survived resizing, save them here.

Usage