.. Autogenerated by build.py

***********
Utility CLI
***********

These are little utilities that are helpful for dealing with the objects in BPReveal.
These take command-line flags. For example,

.. highlight:: none

::

   shapToBigwig --h5 flatScores.h5 --bw flatOutput.bw

..
    Copyright 2022, 2023, 2024 Charles McAnany. This file is part of BPReveal. BPReveal is free software: You can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 2 of the License, or (at your option) any later version. BPReveal is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with BPReveal. If not, see <https://www.gnu.org/licenses/>.

.. toctree::
    :maxdepth: 2

    checkJson
    lengthCalc
    makeLossPlots
    metrics
    motifAddQuantiles
    predictToBigwig
    shapToBigwig
    shapToNumpy
    showModel
    showTrainingProgress